scRNA-seq analysis related R packages

<bulk RNA-seq>

• BisqueRNA 
• MuSiC (R package): The package for deconvolution to cell annotation from scRNA seq 
• xCell (R package)

 

<scRNA-seq>

For cell annotation

• scCATCH (R package)
• singleR

<Pseudo-time trajectory>

• monocle2

 

The proliferation index score: CellCycleScoring (Seurat R package)

*the sum of S scores and G2M scores